Processing and analyses of shotgun metagenomic data and/or transcriptomic data (human, rodent, microbial).

  • Lesley from Nottingham Trent University - microbiome
  • From United Kingdom
  • Responsive
  • Research Services and Capabilities

Summary of the technology

Go from raw shotgun metagenomic data to taxonomic, functional (predicted AMR and virulence genes, primary and secondary metabolites), taxon and gene abundance data, and assembly and annotation of metagenome-assembled genomes.

Go from raw RNAseq data to gene counts, differential gene expression, signalling pathway impact analysis (i.e. which pathways are turned on and off), gene enrichment analysis, KEGG pathway analysis.

Nottingham Trent University - microbiome

Fees

Available upon request.

Accessibility

Contact me directly (lesley.hoyles@ntu.ac.uk) to discuss access to our services.

Short description of how tool can be used

Go from raw shotgun metagenomic data to taxonomic, functional (predicted AMR and virulence genes, primary and secondary metabolites), taxon and gene abundance data, and assembly and annotation of metagenome-assembled genomes.

Go from raw RNAseq data to gene counts, differential gene expression, signalling pathway impact analysis (i.e. which pathways are turned on and off), gene enrichment analysis, KEGG pathway analysis.

Related Keywords

  • functional foods
  • gut
  • human
  • bioinformatics
  • rodent
  • microbiome
  • transcriptomics
  • microbiota
  • host microbiota interactions
  • metagenomices

About Nottingham Trent University - microbiome

UK university.

Lesley Hoyles

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Nottingham Trent University - microbiome

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